Tomographic Reconstructions and their Startling Applications

The aim of this workshop is to bring together experts from mathematics, physics, biology, and medicine in fields where tomographic reconstruction methods are applied.

Examples range

  • from analysing astronomical data recorded by huge telescopes, where only very limited angle information is available and refined adaptive optics techniques are used to remove distortions from the atmosphere,
  • over different variants of exploring wave phenomena in biological samples (such as computer tomography, sonography, optical coherence tomography, photoacoustic imaging, elastography, or magnetic resonance imaging to name just a few), where typically a full quantitative reconstruction of the analysed sample would be desirable,
  • down to microscopical scales studied by methods such as stochastic super-resolution microscopy, where localisations of blinking fluorescent molecules below the diffraction limit are realised by giving up on the unique identifiability of the different molecules, or cryogenic electron microscopy, where precise projection images are taken, but without knowing the orientation of the object.

With the interdisciplinary character of this workshop, we not only hope to picture the broad range from theory to experiment and applications, but also hope to see the advantages and disadvantages of the different approaches under a wide variety of aspects, which hopefully stimulates ideas on how to transfer and adapt well working methods to other settings.

Outline

The workshop will focus

  • in the first week (from Monday, March 15 until Thursday, March 18) on the mathematical problems such as
    • mathematical modelling of the experiments,
    • reconstructions from tomographic data,
    • scattering and inverse scattering problems, and
    • ill-posedness of the inversions and regularisation techniques;
  • in the second week (from Tuesday, March 23 until Thursday, March 25) on the experimental challenges in applications such as
    • adaptive optics,
    • elastography,
    • optical coherence tomography,
    • photoacoustic tomography, and
    • superresolution microscopy.

Organization

The workshop is organized within the special research programme SFB F68 “Tomography Across the Scales”.

Due to the current situation, the event will be held via video conference. The talks will be 30 minutes followed by 15 minutes of discussion.

Main organizer and contact person for the workshop: Peter Elbau, peter.elbau@univie.ac.at.

Registration

In case of interest in participating, please write an email to Peter Elbau, peter.elbau@univie.ac.at, containing name, affiliation and email address.

Acknowledgements

This workshop is hosted and supported by the Erwin Schrödinger International Institute for Mathematics and Physics, a programme-oriented research institute for mathematics and physics at the University of Vienna.

It is also partially supported by the Austrian Science Fund FWF within the special research programme SFB F68 “Tomography Across the Scales”.

March 15, 2021
14:00 — 14:15
Welcome
14:15 — 15:00
Kim Knudsen (Technical U Denmark, Kongens Lyngby)
Feasibility of Acousto-Electric Tomography
15:45 — 16:00
Break
16:00 — 16:45
16:45 — 17:30
17:30 — 19:00
Lunch / Dinner Break
19:25 — 19:45
19:45 — 20:30
Peter Kuchment

Deep Learning Networks for Detecting Presence of Low-Emission Radiation Sources

March 16, 2021
14:45 — 15:30
Roman Novikov (École Polytechnique, Palaiseau)
Phaseless inverse scattering problem
15:30 — 15:45
Break
15:45 — 16:30
17:15 — 18:45
Lunch / Dinner Break
18:45 — 19:30
Günther Uhlmann

40 Years of Calderón's Problem

19:30 — 20:15
March 17, 2021
14:45 — 15:00
Break
15:00 — 16:00
Otmar Scherzer (joint with One World Seminar on Imaging and Inverse Problems)

Reconstructions in Coupled Physics Imaging

This talk is taking place at the imaging & inverse problems (IMAGINE) OneWorld seminar.
Please register at https://sites.google.com/view/oneworldimagine to get the corresponding individual Zoom link.

16:00 — 16:45
Thorsten Hohage (U Göttingen)
On phase contrast x-ray tomography
16:45 — 16:55
Break
18:00 — 19:15
Lunch / Dinner Break
March 18, 2021
13:00 — 13:45
13:45 — 14:30
14:30 — 14:45
Break
14:45 — 15:30
Tanja Tarvainen (U of Eastern Finland, Joensuu)
Bayesian approach to quantitative photoacoustic tomography
16:15 — 17:45
Lunch / Dinner Break
17:45 — 18:30
19:15 — 19:30
Break
20:15 — 21:00
March 23, 2021
10:45 — 11:30
Tobias Buck

Reconstructing galaxy properties from multi-band images

11:30 — 11:45
Break
11:45 — 12:30
Edward Lilley

Is photometric deprojection possible without symmetry assumptions?

12:30 — 14:00
Lunch Break
14:00 — 14:45
15:30 — 15:45
Break
16:30 — 17:15
Liliana Borcea (U of Michigan, Ann Arbor)
Reduced order model approach for inverse scattering
17:15 — 17:30
Break
17:30 — 18:15
Kui Ren

Inversion via Optimization: a Revisit to the Least-Squares Formulation

March 24, 2021
13:00 — 13:45
Brendan Kennedy

Optical coherence elastography: imaging mechanical properties on the micro-scale

13:45 — 14:30
14:30 — 14:45
Break
15:30 — 16:15
Manmohan Singh

Structural and Functional Imaging with Optical Coherence Tomography and Optical Coherence Elastography

16:15 — 16:30
Break
18:00 — 19:30
Lunch / Dinner Break
19:30 — 20:15
March 25, 2021
09:00 — 09:15
Introduction
10:00 — 10:45
Montserrat Lopez Martinez and Arjun Sharma

Setting up a Cryo - Single Molecule Localization Microscope

10:45 — 11:00
Break
11:00 — 11:45
Jörg Enderlein (U Göttingen)
Metal-Indced Energy Transfer Imaging
11:45 — 12:05
Fabian Hinterer

A robust method for bias-free localization of individual fixed dipole emitters achieving the Cramér Rao bound

12:05 — 12:25
Magdalena Schneider

A workflow for sizing oligomeric biomolecules based on cryo single molecule localization microscopy

12:25 — 13:30
Lunch Break
13:30 — 14:15
14:15 — 14:35
Lukas Velas

Applying 3D superresolution microscopy to T-cells

14:35 — 15:20
Francisco Balzarotti

Efficient use of emitted photons with MINFLUX

15:20 — 15:30
Break
15:30
Panel Discussion

Organizers

Name Affiliation
Wolfgang Drexler Medical University of Vienna
Peter Elbau University of Vienna
Ronny Ramlau Radon Institute, RICAM
Monika Ritsch-Marte Medizinische Universität Innsbruck
Otmar Scherzer University of Vienna
Gerhard Schütz Technical University of Vienna

Attendees

Name Affiliation
Giovanni S. Alberti University of Genoa
Andrea Aspri University of Pavia
Felix Bartel Technical University Chemnitz
Larisa Beilina Chalmers University of Technology
Stephanie Blanke University Hamburg
Alina Böcker Max-Planck-Institut für Astronomie
Liliana Borcea University of Michigan
Tobias Buck Leibniz Institute for Astrophysics Potsdam
Lorenzo Busoni Arcetri Astrophysical Observatory
Fioralba Cakoni Rutgers University
Maxence Cassier Institut Fresnel
Raymond Chan City University of Hong Kong
Bryn Davies ETH Zürich
Shiyu Deng Medical University of Vienna
Louis Detweiler Oregon State University
Tram Do University Hamburg
Jörg Enderlein University of Göttingen
Simone Esposito Arcetri Astrophysical Observatory
Jesus Falcon-Barroso Instituto de Astrofísica de Canarias
Adel Faridani Oregon State University
Florian Faucher University of Vienna
Alvaro Hacar University of Vienna
Bernadette Hahn University of Stuttgart
Pavol Harar University of Vienna
Tapio Helin LUT University
Thorsten Hohage University of Göttingen
Simon Hubmer Radon Institute, RICAM
Victoria Hutterer Johannes Kepler Universität
José Iglesias University of Twente
Kevin Islami University of Vienna
Michael Jaeger University of Bern
Alexander Jesacher Medizinische Universität Innsbruck
Prashin Jethwa University of Vienna
Mirza Karamehmedovic Technical University of Denmark
Ahmad Karimi Technical University of Vienna
Alexander Katsevich University of Central Florida
Rainer Kaufmann Centre for Structural Systems Biology
Mengyuan Ke Medical University of Vienna
Brendan Kennedy University of Western Australia
Clemens Kirisits University of Vienna
Kim Knudsen Technical University of Denmark
Lisa Krainz Medical University of Vienna
Remo Kretschmann LUT University
Miska Le Louarn European Southern Observatory
Edward Lilley University of Vienna
Montserrat Lopez Martinez Technical University of Vienna
Mia Kvåle Løvmo Medizinische Universität Innsbruck
Russell Luke University of Göttingen
Peter Maaß University of Bremen
Thomas Mach University of Potsdam
Marie Martig Liverpool John Moores University
Bochra Mejri Laboratoire Jean-Alexandre Dieudonné
Gwenael Mercier University of Vienna
Leonidas Mindrinos University of Vienna
Roman Novikov Ecole Polytechnique, Palaiseau
Robert Nuster University of Graz
David Omogbhe Radon Institute, RICAM
Günther Paltauf University of Graz
Fabian Parzer University of Vienna
Sarah Patch University of Wisconsin-Milwaukee
Juha-Pekka Puska Aalto University
Michael Quellmalz Technical University Berlin
Todd Quinto Tufts University
Aksel Rasmussen Technical University of Denmark
Kui Ren Columbia University
Kamran Sadiq Radon Institute, RICAM
David Sampson University of Surrey
Hjørdis Amanda Schlüter Technical University of Denmark
Magdalena Schneider Technical University of Vienna
John Schotland Yale University
Thomas Schuster University of Saarland
Eric Setterqvist Radon Institute, RICAM
Julia Shatokhina Radon Institute, RICAM
Ekaterina Sherina University of Vienna
Cong Shi University of Vienna
Manmohan Singh University of Houston
Patrick Stähli University of Bern
Gabriele Steidl Technical University Berlin
Leila Taghizadeh Technical University of Munich
Tanja Tarvainen University of Eastern Finland
Gunther Uhlmann University of Washington
Glenn van de Ven University of Vienna
Leopold Veselka University of Vienna
Lihong Wang California Institute of Technology, Pasadena
Preview of Phaseless inverse scattering problem
Roman Novikov (École Polytechnique, Palaiseau): Phaseless inverse scattering problem
March 16, 2021 14:45 — 15:30
Preview of Geometric convergence in total variation regularization
José Iglesias (U of Twente): Geometric convergence in total variation regularization
March 16, 2021 15:45 — 16:30
Preview of Spectral Problems in Inverse Scattering Theory
Fioralba Cakoni (Rutgers U): Spectral Problems in Inverse Scattering Theory
March 16, 2021 19:30 — 20:15
Preview of On phase contrast x-ray tomography
Thorsten Hohage (U Göttingen): On phase contrast x-ray tomography
March 17, 2021 16:00 — 16:45
Preview of Uniform and nonuniform sampling of bandlimited functions with faster convergence
Adel Faridani (Oregon State U, Corvallis): Uniform and nonuniform sampling of bandlimited functions with faster convergence
March 17, 2021 20:00 — 20:45
Preview of Bayesian optimal experimental design in X-ray tomography
Tapio Helin (LUT U, Lappeenranta): Bayesian optimal experimental design in X-ray tomography
March 18, 2021 13:45 — 14:30
Preview of Bayesian approach to quantitative photoacoustic tomography
Tanja Tarvainen (U of Eastern Finland, Joensuu): Bayesian approach to quantitative photoacoustic tomography
March 18, 2021 14:45 — 15:30
Preview of Application of an adaptive finite element method in non-invasive monitoring of hyperthermia
Larisa Beilina (Chalmers U of Technology, Gothenburg): Application of an adaptive finite element method in non-invasive monitoring of hyperthermia
March 18, 2021 17:45 — 18:30
Preview of Rock mass properties by the stochastic homogenization method
Bochra Mejri (Laboratoire J.A. Dieudonné): Rock mass properties by the stochastic homogenization method
March 18, 2021 20:15 — 21:00
Preview of Reconstructing a galaxy's accretion history from integrated spectra
Alina Böcker (MPIA, Heidelberg): Reconstructing a galaxy's accretion history from integrated spectra
March 23, 2021 10:00 — 10:45
Preview of Adaptive Optics in astronomy: an introduction to tomography
Miska Le Louarn (ESO, Garching): Adaptive Optics in astronomy: an introduction to tomography
March 23, 2021 14:00 — 14:45
Preview of Reduced order model approach for inverse scattering
Liliana Borcea (U of Michigan, Ann Arbor): Reduced order model approach for inverse scattering
March 23, 2021 16:30 — 17:15
Preview of Photoacoustic Tomography and Compressed Ultrafast Photography
Lihong Wang (Caltech, Pasadena): Photoacoustic Tomography and Compressed Ultrafast Photography
March 24, 2021 19:30 — 20:15
Preview of Metal-Indced Energy Transfer Imaging
Jörg Enderlein (U Göttingen): Metal-Indced Energy Transfer Imaging
March 25, 2021 11:00 — 11:45
Preview of Localizing single molecules in 3D close to a dielectric interface
Alexander Jesacher (Med Uni Innsbruck): Localizing single molecules in 3D close to a dielectric interface
March 25, 2021 13:30 — 14:15
At a glance
Type:
Online Workshop
When:
March 15, 2021 — March 25, 2021
Where:
Erwin Schrödinger Institute - virtual
Organizer(s):
Wolfgang Drexler (Med U Vienna)
Peter Elbau (U of Vienna)
Ronny Ramlau (RICAM, Linz)
Monika Ritsch-Marte (Med Uni Innsbruck)
Otmar Scherzer (U of Vienna)
Gerhard Schütz (TU Vienna)